Youri I. Pavlov: search on Z-Library

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1

Multiple antimutagenesis mechanisms affect mutagenic activity and specificity of the base analog 6-N-hydroxylaminopurine in bacteria and yeast

Stanislav G. Kozmin, Roel M. Schaaper, Polina V. Shcherbakova, Vladimir N. Kulikov, Vladimir N. Noskov, Maria L. Guetsova, Vladimir V. Alenin, Igor B. Rogozin, Kira S. Makarova, Youri I. Pavlov

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

1998

Language:

english

File:

PDF, 346 KB

english, 1998

2

[International Review of Cytology] A Survey of Cell Biology Volume 255 || Roles of DNA Polymerases in Replication, Repair, and Recombination in Eukaryotes

Pavlov, Youri I.

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

3

Crystal Structure of the Human Primase

Baranovskiy, Andrey G., Zhang, Yinbo, Suwa, Yoshiaki, Babayeva, Nigar D., Gu, Jianyou, Pavlov, Youri I., Tahirov, Tahir H.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 5.61 MB

english, 2015

4

DNA Polymerases at the Eukaryotic Replication Fork Thirty Years after: Connection to Cancer

Pavlov, Youri I., Zhuk, Anna S., Stepchenkova, Elena I.

Journal:

Year:

2020

File:

PDF, 2.17 MB

2020

5

Correction: Evidence for interplay among yeast replicative DNA polymerases alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations

Youri I Pavlov, Satoko Maki, Hisaji Maki, Thomas A Kunkel

Journal:

Year:

2007

Language:

english

File:

PDF, 489 KB

english, 2007

6

Yeast Origins Establish a Strand Bias for Replicational Mutagenesis

Youri I. Pavlov, Carol S. Newlon, Thomas A. Kunkel

Journal:

Year:

2002

Language:

english

File:

PDF, 215 KB

english, 2002

7

AID/APOBEC cytosine deaminase induces genome-wide kataegis

Artem G Lada, Alok Dhar, Robert J Boissy, Masayuki Hirano, Aleksandr A Rubel, Igor B Rogozin, Youri I Pavlov

Journal:

Year:

2012

Language:

english

File:

PDF, 468 KB

english, 2012

8

Mutational signatures and mutable motifs in cancer genomes

Rogozin, Igor B., Pavlov, Youri I., Goncearenco, Alexander, De, Subhajyoti, Lada, Artem G., Poliakov, Eugenia, Panchenko, Anna R., Cooper, David N.

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 865 KB

english, 2017

9

High rate of starvation-associated mutagenesis in Ung−yeast caused by the overproduction of human activation-induced deaminase

Angela Lucaccioni, Youri I. Pavlov, Alessandro Achilli, Nora Babudri

Journal:

Current Genetics

Year:

2007

Language:

english

File:

PDF, 303 KB

english, 2007

10

Evidence for Preferential Mismatch Repair of Lagging Strand DNA Replication Errors in Yeast

Youri I. Pavlov, Ibrahim M. Mian, Thomas A. Kunkel

Journal:

Current Biology

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

11

Divalent ions attenuate DNA synthesis by human DNA polymerase α by changing the structure of the template/primer or by perturbing the polymerase reaction

Zhang, Yinbo, Baranovskiy, Andrey G., Tahirov, Emin T., Tahirov, Tahir H., Pavlov, Youri I.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

12

Crystal structure of the human Polϵ B-subunit in complex with the C-terminal domain of the catalytic subunit

Baranovskiy, Andrey G, Gu, Jianyou, Babayeva, Nigar D, Kurinov, Igor, Pavlov, Youri I, Tahirov, Tahir H

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 8.79 MB

english, 2017

13

DNA polymerase η mutational signatures are found in a variety of different types of cancer

Rogozin, Igor B., Goncearenco, Alexander, Lada, Artem G., De, Subhajyoti, Nudelman, German, Panchenko, Anna R., Cooper, David N., Pavlov, Youri I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

14

Base analog N6-hydroxylaminopurine mutagenesis in Escherichia coli: genetic control and molecular specificity

Youri I. Pavlov, Valentin V. Suslov, Polina V. Shcherbakova, Thomas A. Kunkel, Akira Ono, Akira Matsuda, Roel M. Schaaper

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

1996

Language:

english

File:

PDF, 1.35 MB

english, 1996

15

APOBEC4, a New Member of the AID/APOBEC Family of Polynucleotide (Deoxy)Cytidine Deaminases Predicted by Computational Analysis

Rogozin, Igor B., Basu, Malay K., Jordan, I. King, Pavlov, Youri I., Koonin, Eugene V.

Journal:

Year:

2005

Language:

english

File:

PDF, 932 KB

english, 2005

16

Mismatch Repair–Independent Increase in Spontaneous Mutagenesis in Yeast Lacking Non-Essential Subunits of DNA Polymerase ε

Aksenova, Anna, Volkov, Kirill, Maceluch, Jaroslaw, Pursell, Zachary F., Rogozin, Igor B., Kunkel, Thomas A., Pavlov, Youri I., Johansson, Erik, Haber, James E.

Journal:

Year:

2010

Language:

english

File:

PDF, 309 KB

english, 2010

17

A highly conserved family of inactivated archaeal B family DNA polymerases

Igor B Rogozin, Kira S Makarova, Youri I Pavlov, Eugene V Koonin

Journal:

Year:

2008

Language:

english

File:

PDF, 183 KB

english, 2008

18

Mutagenic specificity of the base analog 6- N -hydroxylaminopurine in the URA3 gene of the yeast Saccharomyces cerevisiae

Shcherbakova, Polina V., Pavlov, Youri I.

Journal:

Year:

1993

Language:

english

File:

PDF, 479 KB

english, 1993

19

DNA polymerases at the eukaryotic fork—20 years later

Youri I. Pavlov, Polina V. Shcherbakova

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2010

Language:

english

File:

PDF, 585 KB

english, 2010

20

Crystal Structure of the Human Pol α B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit

Suwa, Yoshiaki, Gu, Jianyou, Baranovskiy, Andrey G., Babayeva, Nigar D., Pavlov, Youri I., Tahirov, Tahir H.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 7.76 MB

english, 2015

21

Functional Study of the P32T ITPA Variant Associated with Drug Sensitivity in Humans

Elena I. Stepchenkova, Elena R. Tarakhovskaya, Kathryn Spitler, Christin Frahm, Miriam R. Menezes, Peter D. Simone, Carol Kolar, Luis A. Marky, Gloria E.O. Borgstahl, Youri I. Pavlov

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 600 KB

english, 2009

22

The RFC2 gene encoding a subunit of replication factor C of Saccharomyces cerevisiae

Noskov, Vladimir, Maki, Satoko, Kawasaki, Yasuo, Leem, Sun-Hee, Ono, Bun-Ichiro, Araki, Hiroyuki, Pavlov, Youri, Sugino, Akio

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 5.16 MB

english, 1994

23

Inaccurate DNA Synthesis in Cell Extracts of Yeast Producing Active Human DNA Polymerase Iota

Makarova, Alena V., Grabow, Corinn, Gening, Leonid V., Tarantul, Vyacheslav Z., Tahirov, Tahir H., Bessho, Tadayoshi, Pavlov, Youri I., Lichten, Michael

Journal:

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

24

Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

Rogozin, Igor B, Iyer, Lakshminarayan M, Liang, Lizhi, Glazko, Galina V, Liston, Victoria G, Pavlov, Youri I, Aravind, L, Pancer, Zeev

Journal:

Nature Immunology

Year:

2007

Language:

english

File:

PDF, 344 KB

english, 2007

25

Mutator effects of overproducing DNA polymerase η (Rad30) and its catalytically inactive variant in yeast

Youri I Pavlov, Dinh Nguyen, Thomas A Kunkel

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2001

Language:

english

File:

PDF, 131 KB

english, 2001

26

Comment on “The [4Fe4S] cluster of human DNA primase functions as a redox switch using DNA charge transport”

Baranovskiy, Andrey G., Babayeva, Nigar D., Zhang, Yinbo, Blanco, Luis, Pavlov, Youri I., Tahirov, Tahir H.

Journal:

Year:

2017

Language:

english

File:

PDF, 714 KB

english, 2017

27

The exceptionally high rate of spontaneous mutations in the polymerase delta proofreading exonuclease-deficientSaccharomyces cerevisiaestrain starved for adenine

Alessandro Achilli, Nabil Matmati, Enrico Casalone, Giorgio Morpurgo, Angela Lucaccioni, Youri I Pavlov, Nora Babudri

Journal:

Year:

2004

Language:

english

File:

PDF, 675 KB

english, 2004

28

Crystal structure of the C-terminal domain of human DNA primase large subunit

Agarkar, Vinod B., Babayeva, Nigar D., Pavlov, Youri I., Tahirov, Tahir H.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.33 MB

english, 2011

29

Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes

Vladimir I Mayorov, Igor B Rogozin, Linda R Adkison, Christin Frahm, Thomas A Kunkel, Youri I Pavlov

Journal:

Year:

2005

Language:

english

File:

PDF, 585 KB

english, 2005

30

Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors

Tahir H Tahirov, Kira S Makarova, Igor B Rogozin, Youri I Pavlov, Eugene V Koonin

Journal:

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

31

DNA Replication Fidelity with 8-Oxodeoxyguanosine Triphosphate

Pavlov, Youri I., Minnick, Dana T., Izuta, Shunji, Kunkel, Thomas A.

Journal:

Year:

1994

Language:

english

File:

PDF, 880 KB

english, 1994

32

Mutator alleles of yeast DNA polymerase ζ

Ayako N. Sakamoto, Jana E. Stone, Grace E. Kissling, Scott D. McCulloch, Youri I. Pavlov, Thomas A. Kunkel

Journal:

Year:

2007

Language:

english

File:

PDF, 533 KB

english, 2007

33

A novel variant of DNA polymerase ζ, Rev3ΔC, highlights differential regulation of Pol32 as a subunit of polymerase δ versus ζ in Saccharomyces cerevisiae

Siebler, Hollie M., Lada, Artem G., Baranovskiy, Andrey G., Tahirov, Tahir H., Pavlov, Youri I.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.43 MB

english, 2014

34

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

Rogozin, Igor B., Lada, Artem G., Goncearenco, Alexander, Green, Michael R., De, Subhajyoti, Nudelman, German, Panchenko, Anna R., Koonin, Eugene V., Pavlov, Youri I.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 638 KB

english, 2016

35

Mutagenic specificity of the base analog 6-N-hydroxylaminopurine in the LYS2 gene of yeast Saccharomyces cerevisiae

Vladimir V. Kulikov, Irina L. Derkatch, Vladimir N. Noskov, Olga V. Tarunina, Yury O. Chernoff, Igor B. Rogozin, Youri I. Pavlov

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2001

Language:

english

File:

PDF, 128 KB

english, 2001

36

Functions of human DNA polymerases η, κ and ι suggested by their properties, including fidelity with undamaged DNA templates

Thomas A Kunkel, Youri I Pavlov, Katarzyna Bebenek

Journal:

Year:

2003

Language:

english

File:

PDF, 453 KB

english, 2003

37

Base analog 6-N-hydroxylaminopurine mutagenesis in the yeast Saccharomyces cerevisiae is controlled by replicative DNA polymerases

Polina V. Shcherbakova, Vladimir N. Noskov, Michael R. Pshenichnov, Youri I. Pavlov

Journal:

Mutation Research/Genetic Toxicology

Year:

1996

Language:

english

File:

PDF, 863 KB

english, 1996

38

Role of DNA Polymerases in Repeat-Mediated Genome Instability

Kartik A. Shah, Alexander A. Shishkin, Irina Voineagu, Youri I. Pavlov, Polina V. Shcherbakova, Sergei M. Mirkin

Journal:

Year:

2012

Language:

english

File:

PDF, 802 KB

english, 2012

39

Nucleotide Weight Matrices Reveal Ubiquitous Mutational Footprints of AID/APOBEC Deaminases in Human Cancer Genomes

Rogozin, Igor, Roche-Lima, Abiel, Lada, Artem, Belinky, Frida, Sidorenko, Ivan, Glazko, Galina, Babenko, Vladimir, Cooper, David, Pavlov, Youri

Journal:

Year:

2019

Language:

english

File:

PDF, 512 KB

english, 2019

40

Genome-wide screening for genes whose deletions confer sensitivity to mutagenic purine base analogs in yeast

Elena I Stepchenkova, Stanislav G Kozmin, Vladimir V Alenin, Youri I Pavlov

Journal:

Year:

2005

Language:

english

File:

PDF, 1.05 MB

english, 2005

41

ITPA (inosine triphosphate pyrophosphatase): From surveillance of nucleotide pools to human disease and pharmacogenetics

Simone, Peter D., Pavlov, Youri I., Borgstahl, Gloria E.O.

Journal:

Mutation Research/Reviews in Mutation Research

Year:

2013

Language:

english

File:

PDF, 3.05 MB

english, 2013

42

Measuring deaminated nucleotide surveillance enzyme ITPA activity with an ATP-releasing nucleotide chimera

Ji, Debin, Stepchenkova, Elena I., Cui, Jian, Menezes, Miriam R., Pavlov, Youri I., Kool, Eric T.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.13 MB

english, 2017

43

Activity and fidelity of human DNA polymerase α depend on primer structure

Baranovskiy, Andrey G., Duong, Vincent N, Babayeva, Nigar D, Zhang, Yinbo, Pavlov, Youri I., Anderson, Karen S., Tahirov, Tahir H.

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 8.59 MB

english, 2018

44

Evidence for interplay among yeast replicative DNA polymerases alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations

Youri I Pavlov, Satoko Maki, Hisaji Maki, Thomas A Kunkel

Journal:

Year:

2004

Language:

english

File:

PDF, 837 KB

english, 2004

45

Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools

Waisertreiger, Irina S.-R., Liston, Victoria G., Menezes, Miriam R., Kim, Hyun-Min, Lobachev, Kirill S., Stepchenkova, Elena I., Tahirov, Tahir H., Rogozin, Igor B., Pavlov, Youri I.

Journal:

Environmental and Molecular Mutagenesis

Year:

2012

Language:

english

File:

PDF, 799 KB

english, 2012

46

Evidence for Extrinsic Exonucleolytic Proofreading

McElhinny, Stephanie A. Nick, Pavlov, Youri I., Kunkel, Thomas A.

Journal:

Year:

2006

Language:

english

File:

PDF, 557 KB

english, 2006

47

Insight into the Human DNA Primase Interaction with Template-Primer

Baranovskiy, Andrey G., Zhang, Yinbo, Suwa, Yoshiaki, Gu, Jianyou, Babayeva, Nigar D., Pavlov, Youri I., Tahirov, Tahir H.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 1.55 MB

english, 2016

48

Theoretical analysis of mutation hotspots and their DNA sequence context specificity

Igor B. Rogozin, Youri I. Pavlov

Journal:

Mutation Research/Reviews in Mutation Research

Year:

2003

Language:

english

File:

PDF, 251 KB

english, 2003

49

Genome-Wide Mutation Avalanches Induced in Diploid Yeast Cells by a Base Analog or an APOBEC Deaminase

Lada, Artem G., Stepchenkova, Elena I., Waisertreiger, Irina S. R., Noskov, Vladimir N., Dhar, Alok, Eudy, James D., Boissy, Robert J., Hirano, Masayuki, Rogozin, Igor B., Pavlov, Youri I., Maizels, N

Journal:

Year:

2013

Language:

english

File:

PDF, 3.19 MB

english, 2013

50

Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes

Lada, Artem G., Kliver, Sergei F., Dhar, Alok, Polev, Dmitrii E., Masharsky, Alexey E., Rogozin, Igor B., Pavlov, Youri I.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.94 MB

english, 2015

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